STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95379.1Cysteine dioxygenase type I; Pfam: PF05995. (199 aa)    
Predicted Functional Partners:
EFE95380.1
Rhodanese-like protein; Pfam: PF00581; InterPro: IPR001763.
 
    0.953
SsuA_2
Hypothetical protein; COG: COG0715.
 
    0.720
SsuD_1
Luciferase-like monooxygenase; COG: COG2141; Pfam: PF00296; InterPro: IPR011251.
 
    0.707
EFE95374.1
Tat pathway signal sequence domain protein.
 
    0.679
EFE95376.1
acyl-CoA dehydrogenase, C-terminal domain protein; COG: COG1960; Pfam: PF02770,PF08028; InterPro: IPR013764.
 
    0.679
CysL_3
LysR substrate binding domain protein; Pfam: PF00126,PF03466; InterPro: IPR005119; Belongs to the LysR transcriptional regulatory family.
 
     0.664
SsuA_1
ABC transporter, substrate-binding protein, aliphatic sulfonates family; COG: COG0715; Pfam: PF09084; InterPro: IPR010067.
 
    0.633
EFE94940.1
Hypothetical protein.
  
     0.535
SsuC_2
ABC transporter, permease protein; COG: COG0600; Pfam: PF00528; InterPro: IPR000515.
 
    0.482
MtnB_2
Class II Aldolase and Adducin domain protein; COG: COG0235; Pfam: PF00596; InterPro: IPR001303.
 
     0.457
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.