STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaDPhenylacetic acid degradation protein PaaD; COG: COG2050; Pfam: PF03061; InterPro: IPR003736. (146 aa)    
Predicted Functional Partners:
paaK
phenylacetate-CoA oxygenase/reductase, PaaK subunit; COG: COG1018; Pfam: PF00970,PF00175,PF00111; InterPro: IPR011884.
 
 
  0.996
paaF
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.995
paaI
phenylacetate-CoA oxygenase, PaaI subunit; COG: COG3396; Pfam: PF05138; InterPro: IPR007814.
 
 
 0.994
paaH
phenylacetate-CoA oxygenase, PaaH subunit; COG: COG3460; Pfam: PF06243; InterPro: IPR009359.
 
 
 0.994
paaJ
phenylacetate-CoA oxygenase, PaaJ subunit; COG: COG2151; Pfam: PF01883; InterPro: IPR011883.
 
 
 0.993
paaG
phenylacetate-CoA oxygenase, PaaG subunit; COG: COG3396; Pfam: PF05138; InterPro: IPR007814.
 
 
 0.993
paaC
Putative 3-hydroxyacyl-CoA dehydrogenase PaaC; COG: COG1250; Pfam: PF02737,PF00725; InterPro: IPR016040.
  
 0.932
paaB
Putative enoyl-CoA hydratase PaaB; COG: COG1024; Pfam: PF00378; InterPro: IPR011968.
 
 
 0.911
feaB
Phenylacetaldehyde dehydrogenase; COG: COG1012; Pfam: PF00171; InterPro: IPR015590; Belongs to the aldehyde dehydrogenase family.
    
 0.900
paaN
Phenylacetic acid degradation protein paaN; Pfam: PF00171,PF01575; InterPro: IPR011966.
 
  
 0.874
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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