STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaKphenylacetate-CoA oxygenase/reductase, PaaK subunit; COG: COG1018; Pfam: PF00970,PF00175,PF00111; InterPro: IPR011884. (352 aa)    
Predicted Functional Partners:
paaJ
phenylacetate-CoA oxygenase, PaaJ subunit; COG: COG2151; Pfam: PF01883; InterPro: IPR011883.
 
 
 0.997
paaI
phenylacetate-CoA oxygenase, PaaI subunit; COG: COG3396; Pfam: PF05138; InterPro: IPR007814.
 
 0.997
paaH
phenylacetate-CoA oxygenase, PaaH subunit; COG: COG3460; Pfam: PF06243; InterPro: IPR009359.
 
 
 0.997
paaG
phenylacetate-CoA oxygenase, PaaG subunit; COG: COG3396; Pfam: PF05138; InterPro: IPR007814.
 
 0.997
paaD
Phenylacetic acid degradation protein PaaD; COG: COG2050; Pfam: PF03061; InterPro: IPR003736.
 
 
  0.996
paaF
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.989
paaN
Phenylacetic acid degradation protein paaN; Pfam: PF00171,PF01575; InterPro: IPR011966.
 
  
 0.954
nuoD
NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
  
 
 0.940
paaB
Putative enoyl-CoA hydratase PaaB; COG: COG1024; Pfam: PF00378; InterPro: IPR011968.
 
 
 0.930
paaC
Putative 3-hydroxyacyl-CoA dehydrogenase PaaC; COG: COG1250; Pfam: PF02737,PF00725; InterPro: IPR016040.
 
  
 0.911
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.