STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95417.1Transglycosylase associated protein; COG: COG2261; Pfam: PF04226; InterPro: IPR007341. (82 aa)    
Predicted Functional Partners:
EFE95416.1
Hypothetical protein; Pfam: PF05957.
  
  
 0.788
EFE95415.1
Hypothetical protein.
       0.721
EFE95418.1
Hypothetical protein; COG: COG3753; Pfam: PF06078; InterPro: IPR009282.
  
    0.607
EFE95929.1
Hypothetical protein; COG: COG3422; Pfam: PF07411; InterPro: IPR010879.
  
  
 0.545
elaB-2
Protein ElaB; COG: COG4575; Pfam: PF05957; InterPro: IPR010279.
  
  
 0.455
dps
Ferritin-like protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction; Belongs to the Dps family.
 
    0.404
EFE93357.1
Hypothetical protein.
   
  
 0.401
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.