STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcsATranscriptional regulator, LuxR family; Component of the Rcs signaling system, which controls transcription of numerous genes. Binds to DNA to regulate expression of genes. (209 aa)    
Predicted Functional Partners:
rcsD
Hpt domain protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
     
 0.918
rcsB
Capsular synthesis regulator component B; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions.
  
 0.859
RcsB_1
Transcriptional regulator, LuxR family; COG: COG2197; Pfam: PF00196; InterPro: IPR011991.
  
 0.843
mrgR
Response regulator receiver domain protein; COG: COG2197; Pfam: PF00072,PF00196; InterPro: IPR001789.
  
 0.843
lasI
Acyl-homoserine-lactone synthase; COG: COG3916; Pfam: PF00765; InterPro: IPR016181.
  
  
 0.589
expI
Autoinducer synthetase; Pfam: PF00765; InterPro: IPR016181.
  
  
 0.589
barA
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00672,PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
   
  
 0.414
arcB
PAS domain S-box protein; COG: COG0642; Pfam: PF00989,PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
   
  
 0.400
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.