STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AdaA_1Transcriptional regulator, AraC family; COG: COG4753; Pfam: PF00165; InterPro: IPR000005. (283 aa)    
Predicted Functional Partners:
EFE95431.1
Hypothetical protein.
       0.773
AdaA_2
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
     0.669
EFE95430.1
Hypothetical protein; COG: COG4289.
 
     0.639
RhaR_1
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
  
     0.635
Ada
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
     0.615
ywbF
oligosaccharide:H+ symporter; Pfam: PF01306; InterPro: IPR000576.
 
     0.599
Ugl
Glycosyl hydrolase, family 88; Pfam: PF07470; InterPro: IPR012341.
 
     0.539
hpaA
4-hydroxyphenylacetate catabolism regulatory protein HpaA; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR011983.
  
   0.496
CysL_3
LysR substrate binding domain protein; Pfam: PF00126,PF03466; InterPro: IPR005119; Belongs to the LysR transcriptional regulatory family.
  
    0.454
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.