STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95074.1Hypothetical protein. (234 aa)    
Predicted Functional Partners:
EFE95075.1
Hypothetical protein.
 
   
 0.956
bsaA
Glutathione peroxidase; COG: COG0386; Pfam: PF00255; InterPro: IPR012335; Belongs to the glutathione peroxidase family.
    
 0.731
gpxA
Glutathione peroxidase; Non-specific peroxidase that can use thioredoxin or glutathione as a reducing agent.
    
 0.731
dsbE
Thiol:disulfide interchange protein DsbE; COG: COG0526; Pfam: PF08534; InterPro: IPR004799.
   
 0.687
scsD
Antioxidant, AhpC/TSA family; COG: COG0526; Pfam: PF00578; InterPro: IPR012335.
   
 0.687
TrbB
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB; InterPro: IPR014109.
   
 0.687
traF
type-F conjugative transfer system pilin assembly protein TraF; InterPro: IPR014110.
   
 0.687
FabG_10
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR016040; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.449
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.