STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YciE_1Hypothetical protein; COG: COG3685; Pfam: PF05974; InterPro: IPR010287. (178 aa)    
Predicted Functional Partners:
YciF
Hypothetical protein; COG: COG3685; Pfam: PF05974; InterPro: IPR010287.
 
  
 0.919
EFE94478.1
Hypothetical protein; COG: COG3729.
 
  
 0.738
YdbD
Hypothetical protein; COG: COG3546; Pfam: PF05067; InterPro: IPR007760.
 
    0.697
EFE94559.1
Hypothetical protein; COG: COG3729.
 
  
 0.662
YncE
PQQ enzyme repeat protein; COG: COG3391; InterPro: IPR015943.
  
     0.605
yjjM
FCD domain protein; COG: COG1802; Pfam: PF00392,PF07729.
  
     0.573
EFE95083.1
Hypothetical protein.
       0.550
kdgT
2-keto-3-deoxygluconate transporter; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family.
  
     0.522
gam
Bacteriophage Mu Gam like protein; COG: COG4396; Pfam: PF07352; InterPro: IPR009951.
       0.506
YetF_1
Hypothetical protein; COG: COG2323; Pfam: PF04239; InterPro: IPR007353.
 
     0.504
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.