STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YetF_1Hypothetical protein; COG: COG2323; Pfam: PF04239; InterPro: IPR007353. (230 aa)    
Predicted Functional Partners:
ydaD
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR002198.
 
    0.765
YdbD
Hypothetical protein; COG: COG3546; Pfam: PF05067; InterPro: IPR007760.
 
   
 0.661
YciF
Hypothetical protein; COG: COG3685; Pfam: PF05974; InterPro: IPR010287.
 
     0.548
EFE98246.1
Hypothetical protein; COG: COG1145; Pfam: PF03860.
  
     0.514
YciE_1
Hypothetical protein; COG: COG3685; Pfam: PF05974; InterPro: IPR010287.
 
     0.504
fdh
GroES-like protein; COG: COG1063; Pfam: PF08240,PF00107; InterPro: IPR002085.
  
     0.471
EFE95083.1
Hypothetical protein.
       0.453
EFE97770.1
Hypothetical protein; Similar to Streptomyces cyclase/dehydrase; COG: COG5637.
  
     0.411
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.