STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95096.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
EFE95098.1
Hypothetical protein; Pfam: PF08786; InterPro: IPR014894.
     
 0.793
EFE95099.1
Rhs element Vgr protein; COG: COG3501; Pfam: PF04524; InterPro: IPR006533.
  
  
 0.779
EFE95097.1
Hypothetical protein; Pfam: PF05488.
       0.773
EFE97768.1
Hypothetical protein.
   
 
 0.689
PknB
Hypothetical protein; COG: COG0515; Pfam: PF00069; InterPro: IPR002290; 2.7.11.1.
       0.452
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.