STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PknBHypothetical protein; COG: COG0515; Pfam: PF00069; InterPro: IPR002290; 2.7.11.1. (479 aa)    
Predicted Functional Partners:
Stp_1
Protein phosphatase 2C; COG: COG0631; Pfam: PF00481; InterPro: IPR001932.
 
 
 0.938
EFE95108.1
Type VI secretion system FHA domain protein.
 
 
 
 0.923
EFE95116.1
Type VI secretion-associated protein, BMA_A0400 family.
 
  
 0.783
EFE95109.1
FHA domain protein; Pfam: PF00498.
 
  
 0.777
clpV
Type VI secretion ATPase, ClpV1 family; COG: COG0542; Pfam: PF02861,PF00004,PF07724; InterPro: IPR003593; Belongs to the ClpA/ClpB family.
 
  
 0.768
sciE
ImpE protein; COG: COG4455; Pfam: PF07024; InterPro: IPR009211.
 
    0.763
EFE95102.1
Type VI secretion protein, VC_A0111 family; COG: COG3520; Pfam: PF06996; InterPro: IPR010732.
 
    0.742
EFE95104.1
Type VI secretion system lysozyme-related protein; COG: COG3518; Pfam: PF04965; InterPro: IPR007048.
 
    0.729
vasA
Type VI secretion protein, VC_A0110 family; COG: COG3519; Pfam: PF05947; InterPro: IPR010272.
 
  
 0.723
EFE95099.1
Rhs element Vgr protein; COG: COG3501; Pfam: PF04524; InterPro: IPR006533.
 
  
 0.641
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.