STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sirAType VI secretion protein, EvpB/VC_A0108 family; COG: COG3517; Pfam: PF05943; InterPro: IPR010269. (501 aa)    
Predicted Functional Partners:
EFE95114.1
Type VI secretion protein, VC_A0107 family; COG: COG3516; Pfam: PF05591; InterPro: IPR008312.
 
 0.999
bpp
Type VI secretion system OmpA/MotB family protein; COG: COG3455; Pfam: PF00691; InterPro: IPR006665.
 
  
 0.997
Hcp1_2
Type VI secretion system effector, Hcp1 family; COG: COG3157; Pfam: PF05638; InterPro: IPR008514.
 
 
 0.969
EFE95115.1
Type VI secretion-associated protein, ImpA family; COG: COG3515; Pfam: PF06812; InterPro: IPR010657.
 
  
 0.958
hcp1
Type VI secretion system effector, Hcp1 family; COG: COG3157; Pfam: PF05638; InterPro: IPR008514.
 
 
 0.953
vasA
Type VI secretion protein, VC_A0110 family; COG: COG3519; Pfam: PF05947; InterPro: IPR010272.
 
  
 0.947
icmF
Type VI secretion protein IcmF; COG: COG3523; Pfam: PF06761,PF06744; InterPro: IPR009612.
 
  
 0.947
EFE95104.1
Type VI secretion system lysozyme-related protein; COG: COG3518; Pfam: PF04965; InterPro: IPR007048.
 
  
 0.943
EFE95119.1
Type VI secretion protein, VC_A0114 family; COG: COG3522; Pfam: PF05936; InterPro: IPR010263.
 
  
 0.941
clpV
Type VI secretion ATPase, ClpV1 family; COG: COG0542; Pfam: PF02861,PF00004,PF07724; InterPro: IPR003593; Belongs to the ClpA/ClpB family.
 
 
 0.934
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.