STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95122.1Hypothetical protein. (45 aa)    
Predicted Functional Partners:
EFE95121.1
Hypothetical protein.
       0.631
EFE95123.1
Hypothetical protein.
       0.572
EFE95120.1
Type VI secretion lipoprotein, VC_A0113 family; COG: COG3521.
       0.569
icmF
Type VI secretion protein IcmF; COG: COG3523; Pfam: PF06761,PF06744; InterPro: IPR009612.
       0.488
bpp
Type VI secretion system OmpA/MotB family protein; COG: COG3455; Pfam: PF00691; InterPro: IPR006665.
       0.488
EFE95119.1
Type VI secretion protein, VC_A0114 family; COG: COG3522; Pfam: PF05936; InterPro: IPR010263.
       0.488
EFE95116.1
Type VI secretion-associated protein, BMA_A0400 family.
       0.453
EFE95115.1
Type VI secretion-associated protein, ImpA family; COG: COG3515; Pfam: PF06812; InterPro: IPR010657.
       0.415
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.