STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tapPutative flagellar protein FliS; COG: COG0840; Pfam: PF02203,PF00672,PF00015; InterPro: IPR004089. (521 aa)    
Predicted Functional Partners:
cheA
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0643; Pfam: PF01627,PF09078,PF02895,PF02518,PF01584; InterPro: IPR003594.
 
 0.996
cheW
CheW-like protein; COG: COG0835; Pfam: PF01584; InterPro: IPR002545.
 
 0.996
cheR
CheR methyltransferase, SAM binding domain protein; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
 
 0.994
cheB
Response regulator receiver domain protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.994
atoS
PAS domain S-box protein; COG: COG2202; Pfam: PF08447,PF00015; InterPro: IPR013655.
0.983
cheY-2
Chemotaxis protein CheY; COG: COG0784; Pfam: PF00072; InterPro: IPR001789.
 
 0.977
Tsr
Methyl-accepting chemotaxis protein signaling domain protein; COG: COG0840; Pfam: PF02203,PF00672,PF00015; InterPro: IPR004089.
 
  
 
0.946
dppA
ABC transporter, substrate-binding protein, family 5; COG: COG0747; Pfam: PF00496; InterPro: IPR000914.
     
 0.900
dppA2
ABC transporter, substrate-binding protein, family 5; COG: COG0747; Pfam: PF00496; InterPro: IPR000914.
 
   
 0.900
dppA4
ABC transporter, substrate-binding protein, family 5; COG: COG0747; Pfam: PF00496; InterPro: IPR000914.
     
 0.900
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.