STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GadWTranscriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005. (271 aa)    
Predicted Functional Partners:
yfdH
Bactoprenol glucosyl transferase-like protein; COG: COG0463; Pfam: PF00535; InterPro: IPR001173.
   
   0.461
EFE95170.1
Hypothetical protein.
       0.459
YfdG_2
GtrA-like protein; Involved in O antigen modification. Involved in the translocation of bactoprenol-linked glucose across the cytoplasmic membrane.
       0.459
EFE97640.1
DEAD/DEAH box helicase; COG: COG1205; Pfam: PF00270,PF00271; InterPro: IPR014001.
  
     0.431
EFE95693.1
Hypothetical protein; COG: COG3575; Pfam: PF06042; InterPro: IPR009267.
  
     0.414
fliT
Flagellar protein FliT; Dual-function protein that regulates the transcription of class 2 flagellar operons and that also acts as an export chaperone for the filament-capping protein FliD. As a transcriptional regulator, acts as an anti-FlhDC factor; it directly binds FlhC, thus inhibiting the binding of the FlhC/FlhD complex to class 2 promoters, resulting in decreased expression of class 2 flagellar operons. As a chaperone, effects FliD transition to the membrane by preventing its premature polymerization, and by directing it to the export apparatus.
       0.410
fliS
Flagellar protein FliS; COG: COG1516; Pfam: PF02561; InterPro: IPR003713.
       0.410
estB
Hydrolase, alpha/beta domain protein; COG: COG0596; Pfam: PF00561; InterPro: IPR000073.
  
     0.403
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.