STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcyDPyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family; COG: COG2515; Pfam: PF00291; InterPro: IPR005966. (328 aa)    
Predicted Functional Partners:
PatB
Aminotransferase, class I/II; COG: COG1168; Pfam: PF00155; InterPro: IPR004839.
    
  0.903
malY
Aminotransferase, class I/II; COG: COG1168; Pfam: PF00155; InterPro: IPR004839.
    
  0.903
metC-2
Cystathionine beta-lyase; COG: COG0626; Pfam: PF01053; InterPro: IPR006233.
     
 0.902
metC5
Cys/Met metabolism PLP-dependent enzyme; COG: COG0626; Pfam: PF01053; InterPro: IPR000277.
     
 0.902
metC-3
Cystathionine beta-lyase; COG: COG0626; Pfam: PF01053; InterPro: IPR006233.
     
 0.901
fliY3
Putative cystine-binding periplasmic protein; COG: COG0834; Pfam: PF00497; InterPro: IPR001638.
 
  
 0.669
fliY2
Cystine transporter subunit; COG: COG0834; Pfam: PF00497; InterPro: IPR001638.
 
  
 0.642
tcyC
ABC transporter, ATP-binding protein; COG: COG1126; Pfam: PF00005; InterPro: IPR003593.
       0.545
yecS
Putative ectoine/hydroxyectoine ABC transporter, permease protein EhuC; COG: COG0765; Pfam: PF00528; InterPro: IPR000515.
  
  
 0.544
fliZ
Flagellar regulatory protein FliZ; Pfam: PF02899.
       0.542
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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