STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdBTat-translocated enzyme; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family. (434 aa)    
Predicted Functional Partners:
ycdO
Imelysin; COG: COG2822; Pfam: PF04302; InterPro: IPR007399.
 
  
 0.991
efeU
FTR1 family protein; COG: COG0672; Pfam: PF03239; InterPro: IPR004923.
 
  
 0.974
EFE95192.1
Hypothetical protein.
       0.701
nasR
ANTAR domain protein; Pfam: PF08376,PF03861; InterPro: IPR013587.
       0.701
copC
Copper resistance protein CopC; COG: COG2372; Pfam: PF04234; InterPro: IPR007348.
  
  
 0.596
tehB
Tellurite resistance protein TehB; COG: COG0500; Pfam: PF03848; InterPro: IPR004537.
  
     0.444
EFE95188.1
Hypothetical protein.
       0.443
pheA
Chorismate mutase; COG: COG0077; Pfam: PF01817,PF00800; InterPro: IPR001086.
     
 0.418
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.