STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nasRANTAR domain protein; Pfam: PF08376,PF03861; InterPro: IPR013587. (422 aa)    
Predicted Functional Partners:
nrtA
Tat pathway signal sequence domain protein; COG: COG0715.
 
  
 0.870
ntrC-2
Nitrate ABC transporter, ATP-binding protein C and D; COG: COG1116; Pfam: PF00005; InterPro: IPR005890.
 
   
 0.788
nasA
Molybdopterin oxidoreductase; COG: COG0243; Pfam: PF04879,PF00384,PF01568,PF04324; InterPro: IPR006656; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.788
EFE95192.1
Hypothetical protein.
       0.773
nirB-2
Nitrite reductase [NAD(P)H], large subunit; COG: COG1251; Pfam: PF07992,PF00070,PF04324,PF03460,PF01077; InterPro: IPR012744; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.773
urtA
Urea ABC transporter, urea binding protein; COG: COG0683.
 
 
 0.750
ntrB
Nitrate ABC transporter, permease protein; COG: COG0600; Pfam: PF00528; InterPro: IPR005889.
 
   
 0.733
braC
Receptor family ligand-binding protein; COG: COG0683; Pfam: PF01094; InterPro: IPR001828.
  
 
 0.703
ycdB
Tat-translocated enzyme; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
       0.701
ycdO
Imelysin; COG: COG2822; Pfam: PF04302; InterPro: IPR007399.
       0.682
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.