STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrtATat pathway signal sequence domain protein; COG: COG0715. (424 aa)    
Predicted Functional Partners:
ntrB
Nitrate ABC transporter, permease protein; COG: COG0600; Pfam: PF00528; InterPro: IPR005889.
 
 
 0.996
ntrC-2
Nitrate ABC transporter, ATP-binding protein C and D; COG: COG1116; Pfam: PF00005; InterPro: IPR005890.
  
 0.977
nasA
Molybdopterin oxidoreductase; COG: COG0243; Pfam: PF04879,PF00384,PF01568,PF04324; InterPro: IPR006656; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.912
nasR
ANTAR domain protein; Pfam: PF08376,PF03861; InterPro: IPR013587.
 
  
 0.870
nirB-2
Nitrite reductase [NAD(P)H], large subunit; COG: COG1251; Pfam: PF07992,PF00070,PF04324,PF03460,PF01077; InterPro: IPR012744; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.864
tauB2
ABC transporter, ATP-binding protein; COG: COG1116; Pfam: PF00005; InterPro: IPR003593.
  
 0.743
ssuB
ABC transporter, ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
  
 0.720
SsuC_2
ABC transporter, permease protein; COG: COG0600; Pfam: PF00528; InterPro: IPR000515.
 
  
 0.670
tauC
ABC transporter, permease protein; COG: COG0600; Pfam: PF00528; InterPro: IPR000515.
 
  
 0.649
cobA-3
uroporphyrinogen-III C-methyltransferase; COG: COG0007; Pfam: PF00590; InterPro: IPR006366; Belongs to the precorrin methyltransferase family.
  
  
 0.636
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.