STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nasAMolybdopterin oxidoreductase; COG: COG0243; Pfam: PF04879,PF00384,PF01568,PF04324; InterPro: IPR006656; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (865 aa)    
Predicted Functional Partners:
nirB-2
Nitrite reductase [NAD(P)H], large subunit; COG: COG1251; Pfam: PF07992,PF00070,PF04324,PF03460,PF01077; InterPro: IPR012744; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 0.995
ntrC-2
Nitrate ABC transporter, ATP-binding protein C and D; COG: COG1116; Pfam: PF00005; InterPro: IPR005890.
 
  
 0.989
ntrB
Nitrate ABC transporter, permease protein; COG: COG0600; Pfam: PF00528; InterPro: IPR005889.
 
  
 0.985
nirD
Nitrite reductase [NAD(P)H], small subunit; COG: COG2146; InterPro: IPR012748; overlaps another CDS with the same product name.
 
 
 0.974
napB
Periplasmic nitrate reductase, diheme cytochrome c subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
  
 0.949
narH
Nitrate reductase, beta subunit; COG: COG1140; Pfam: PF00037; InterPro: IPR006547; overlaps another CDS with the same product name.
   
 0.933
narH-2
Nitrate reductase, beta subunit; COG: COG1140; Pfam: PF00037; InterPro: IPR006547.
   
 0.933
narK
Nitrite transporter; COG: COG2223; Pfam: PF07690; InterPro: IPR004737.
 
 
 0.931
narK-2
Nitrite extrusion protein 1; COG: COG2223; Pfam: PF07690; InterPro: IPR004737.
 
 
 0.930
cysJ
Sulfite reductase (NADPH) flavoprotein, alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. Belongs to the NADPH-dependent sulphite reductase flavoprotein subunit CysJ family. In the N-terminal section; belongs to the flavodoxin family.
 
  
 0.928
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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