STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95224.1Hypothetical protein; Overlaps another CDS with the same product name. (281 aa)    
Predicted Functional Partners:
arbF
PTS system, beta-glucoside-specific, IIABC component; COG: COG1263; Pfam: PF00367,PF02378,PF00358; InterPro: IPR011297.
  
  
 0.975
nagE
PTS system, N-acetylglucosamine-specific IIBC component; COG: COG1263; Pfam: PF02378,PF00367,PF00358; InterPro: IPR010974.
  
  
 0.975
EFE95223.1
Carbohydrate binding domain protein; Pfam: PF02018; overlaps another CDS with the same product name.
      0.877
EFE95220.1
Glycosyltransferase, group 2 family protein; Pfam: PF00535; InterPro: IPR001173.
       0.777
TagE_2
Glycosyltransferase, group 1 family protein; COG: COG0438; Pfam: PF00534; InterPro: IPR001296.
       0.777
EFE95219.1
Hypothetical protein.
       0.773
wbdN
Glycosyltransferase, group 2 family protein; COG: COG0463; Pfam: PF00535; InterPro: IPR001173.
       0.773
treB
PTS system, glucose-like IIB component; Pfam: PF00367,PF02378; InterPro: IPR001996; overlaps another CDS with the same product name.
  
  
 0.766
treB2
Phosphotransferase system, EIIC; COG: COG1263; Pfam: PF02378; overlaps another CDS with the same product name.
  
  
 0.766
ascF
Phosphotransferase system, EIIC; COG: COG1263; Pfam: PF00367,PF02378; InterPro: IPR003352.
  
  
 0.766
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.