STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95230.1Hypothetical protein. (172 aa)    
Predicted Functional Partners:
narG
Nitrate reductase, alpha subunit; COG: COG5013; Pfam: PF04879,PF00384; InterPro: IPR006468.
       0.438
EFE95226.1
Molybdopterin dinucleotide binding domain protein; COG: COG5013; Pfam: PF01568; InterPro: IPR009010.
       0.438
narH
Nitrate reductase, beta subunit; COG: COG1140; Pfam: PF00037; InterPro: IPR006547; overlaps another CDS with the same product name.
       0.438
narJ
Nitrate reductase molybdenum cofactor assembly chaperone; COG: COG2180; Pfam: PF02613; InterPro: IPR003765; overlaps another CDS with the same product name.
       0.438
narI
Respiratory nitrate reductase, gamma subunit; COG: COG2181; Pfam: PF02665; InterPro: IPR003816.
       0.438
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.