STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaULysM domain protein; COG: COG1652; Pfam: PF04972,PF01476; InterPro: IPR007055. (148 aa)    
Predicted Functional Partners:
EFE95929.1
Hypothetical protein; COG: COG3422; Pfam: PF07411; InterPro: IPR010879.
 
   0.896
EFE93357.1
Hypothetical protein.
  
   0.788
osmY
Phospholipid-binding domain protein; COG: COG2823; Pfam: PF04972; InterPro: IPR014004.
  
  
 0.770
EFE98138.1
Hypothetical protein; COG: COG3126.
  
    0.727
gpw
Putative lysozyme; COG: COG3628; Pfam: PF04965; InterPro: IPR007048.
  
   0.724
EFE93360.1
Putative lysozyme; Pfam: PF04965; InterPro: IPR007048.
  
   0.724
elaB-2
Protein ElaB; COG: COG4575; Pfam: PF05957; InterPro: IPR010279.
   
  
 0.681
OsmY_4
Phospholipid-binding domain protein; COG: COG2823; Pfam: PF04972; InterPro: IPR014004.
  
  
 0.674
pilQ
Type IV pilus secretin PilQ; COG: COG4796; Pfam: PF07660,PF03958,PF00263; InterPro: IPR013355.
   
 
 0.664
EFE93364.1
Conserved hypothetical phage tail region protein; InterPro: IPR011747.
  
   0.649
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.