STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YhhW_2Pirin family protein; COG: COG1741; Pfam: PF02678,PF05726; InterPro: IPR012093; Belongs to the pirin family. (290 aa)    
Predicted Functional Partners:
ygiD
Aromatic ring-opening dioxygenase, catalytic subunit LigB; COG: COG3384; Pfam: PF02900; InterPro: IPR004183.
 
  
 0.709
EFE94868.1
Hypothetical protein.
       0.474
EFE94867.1
Hypothetical protein.
       0.436
EFE94866.1
Hypothetical protein.
       0.428
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.