STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araC3Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR012287. (128 aa)    
Predicted Functional Partners:
RhaR_1
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
  
     0.693
AdaA_2
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
     0.642
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.634
Ada
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
     0.621
yijO
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005.
  
     0.563
adpA
Transcriptional regulator, AraC family; COG: COG4977; Pfam: PF01965,PF00165; InterPro: IPR000005.
  
 
 0.528
SoxS_1
Transcriptional regulator, AraC family; COG: COG4977; Pfam: PF01965,PF00165; InterPro: IPR002818.
  
 
 0.478
RhaS_6
Transcriptional regulator AraC N-terminal domain protein; COG: COG2207; Pfam: PF06719,PF00165; InterPro: IPR009594.
  
     0.413
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.