STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YobDHypothetical protein; COG: COG4811; Pfam: PF06173; InterPro: IPR009328. (156 aa)    
Predicted Functional Partners:
EFE94277.1
Hypothetical protein.
  
     0.764
bcsE
Cellulose biosynthesis protein BcsE.
  
     0.763
csiE
PRD domain protein; COG: COG3711; Pfam: PF00874; InterPro: IPR011608.
  
     0.759
flhE
Flagellar protein FlhE; Pfam: PF06366; InterPro: IPR009420.
  
     0.754
oppA
ABC transporter, substrate-binding protein, family 5; COG: COG4533; Pfam: PF00496; InterPro: IPR000914.
  
     0.746
flgM
Flagellar biosynthesis anti-sigma factor FlgM; COG: COG2747; Pfam: PF04316; InterPro: IPR007412.
  
     0.746
TomB
Hypothetical protein.
  
     0.744
pspG
Phage shock protein G; InterPro: IPR014318.
  
     0.744
manZ
PTS system, mannose/fructose/sorbose family, IID component; COG: COG3716; Pfam: PF03613; InterPro: IPR004704.
 
    0.739
manY
Mannose permease IIC component; COG: COG3715; Pfam: PF03609; InterPro: IPR004700.
 
     0.738
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.