STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
manYMannose permease IIC component; COG: COG3715; Pfam: PF03609; InterPro: IPR004700. (266 aa)    
Predicted Functional Partners:
manZ
PTS system, mannose/fructose/sorbose family, IID component; COG: COG3716; Pfam: PF03613; InterPro: IPR004704.
 0.999
manX
PTS system, mannose/fructose/sorbose family, IIB component; COG: COG3444; Pfam: PF03610,PF03830; InterPro: IPR004720.
 
 0.999
ptnD
PTS system mannose/fructose/sorbose family IID component; COG: COG3716; Pfam: PF03613; InterPro: IPR004704.
 
 0.990
ptfB
PTS system sorbose subfamily IIB component; COG: COG3444; Pfam: PF03830; InterPro: IPR004720.
 
 
 0.941
ptsH
Phosphocarrier protein HPr; COG: COG1925; Pfam: PF00381; InterPro: IPR000032.
  
 
 0.911
manA
Mannose-6-phosphate isomerase, class I; COG: COG1482; Pfam: PF01238; InterPro: IPR001250; Belongs to the mannose-6-phosphate isomerase type 1 family.
    
  0.906
manB
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; COG: COG1109; Pfam: PF02878,PF02879,PF02880,PF00408; InterPro: IPR016055.
     
  0.900
scrK-2
Fructokinase; COG: COG0524; Pfam: PF00294; InterPro: IPR011611; Belongs to the carbohydrate kinase PfkB family.
  
 
  0.803
mak
ROK family protein; COG: COG1940; Pfam: PF00480; InterPro: IPR000600.
     
 0.800
ptfA
PTS system fructose IIA component; Pfam: PF03610; InterPro: IPR004701.
 
 
 0.785
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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