STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copCCopper resistance protein CopC; COG: COG2372; Pfam: PF04234; InterPro: IPR007348. (127 aa)    
Predicted Functional Partners:
YebZ
Copper resistance protein D; COG: COG1276; Pfam: PF05425; InterPro: IPR008457.
 
  
 0.961
EFE94915.1
Hypothetical protein.
 
  
 0.718
HcaD
Pyridine nucleotide-disulfide oxidoreductase; COG: COG0446; Pfam: PF07992,PF00070; InterPro: IPR013027.
  
 
   0.677
yfeX
Dyp-type peroxidase family protein; COG: COG2837; Pfam: PF04261; InterPro: IPR006314.
  
  
 0.596
ycdB
Tat-translocated enzyme; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
  
  
 0.596
EFE96316.1
PepSY domain protein; COG: COG3182; Pfam: PF03929.
  
    0.564
EFE95640.1
PepSY domain protein; Pfam: PF03929.
  
    0.564
actP
Copper-exporting ATPase; COG: COG2217; Pfam: PF00403,PF00122,PF00702; InterPro: IPR001757.
     
 0.530
EFE96092.1
Cytochrome C; Pfam: PF00034; InterPro: IPR009056.
    
   0.481
ftnB
Ferritin-like protein; Iron-storage protein.
       0.469
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.