STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YebZCopper resistance protein D; COG: COG1276; Pfam: PF05425; InterPro: IPR008457. (293 aa)    
Predicted Functional Partners:
copC
Copper resistance protein CopC; COG: COG2372; Pfam: PF04234; InterPro: IPR007348.
 
  
 0.961
EFE94915.1
Hypothetical protein.
 
  
 0.860
EFE96463.1
Hypothetical protein.
  
     0.753
EFE95445.1
Hypothetical protein.
  
     0.707
ArfA_2
Hypothetical protein; COG: COG3036; Pfam: PF03889; InterPro: IPR005589.
  
     0.705
secM
Secretion monitor precursor protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.679
EFE96912.1
Hypothetical protein; Overlaps another CDS with the same product name; 3.6.1.-.
  
     0.674
EFE94171.1
Hypothetical protein.
  
     0.654
pgpB
PAP2 family protein; Involved in the modification of the lipid A domain of lipopolysaccharides (LPS). Transfers a phosphate group from undecaprenyl pyrophosphate (C55-PP) to lipid A to form lipid A 1- diphosphate. Contributes to the recycling of undecaprenyl phosphate (C55-P); Belongs to the LpxT phosphotransferase family.
  
     0.638
EFE93711.1
Hypothetical protein; Pfam: PF06779; InterPro: IPR010645.
  
     0.638
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.