STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaG(R)-3-hydroxydecanoyl-ACP:CoA transacylase family protein. (279 aa)    
Predicted Functional Partners:
EFE98316.1
Phage tail tape measure protein, TP901 family; InterPro: IPR010090.
  
     0.556
YjcH
Hypothetical protein; Pfam: PF04341; InterPro: IPR007436.
  
     0.549
EFE95666.1
Hypothetical protein; Pfam: PF04187; InterPro: IPR007314.
  
     0.536
EFE97694.1
Hypothetical protein.
  
     0.533
EFE94923.1
Hypothetical protein; COG: COG0596.
       0.491
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.490
EFE94925.1
Hypothetical protein.
       0.485
EFE94462.1
Hypothetical protein.
  
     0.461
NdhL
Tat pathway signal sequence domain protein; COG: COG1529; Pfam: PF02738; InterPro: IPR008274.
  
    0.454
EFE93879.1
Acetyltransferase, GNAT family; Pfam: PF00583; InterPro: IPR016181.
  
    0.444
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.