STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94936.1TRAP transporter, 4TM/12TM fusion protein; COG: COG4666; Pfam: PF06808; InterPro: IPR011853. (655 aa)    
Predicted Functional Partners:
EFE94937.1
TRAP transporter solute receptor, TAXI family; COG: COG2358; InterPro: IPR011852.
 
 
 0.996
LutR_6
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
 
     0.845
LhgO_2
FAD dependent oxidoreductase; COG: COG0579; Pfam: PF01266; InterPro: IPR006076.
       0.790
tctA
Membrane protein; COG: COG3333; Pfam: PF01970; InterPro: IPR002823.
  
     0.663
dctP
TRAP transporter solute receptor, DctP family; COG: COG1638; Pfam: PF03480; InterPro: IPR004682.
  
     0.645
yiiZ
TRAP transporter solute receptor, DctP family; COG: COG1638; Pfam: PF03480; InterPro: IPR004682.
  
     0.615
EFE96549.1
TRAP transporter, DctQ-like membrane protein; COG: COG3090; Pfam: PF04290; InterPro: IPR007387.
  
     0.521
YiaM
TRAP transporter, DctQ-like membrane protein; COG: COG3090; Pfam: PF04290; InterPro: IPR007387; overlaps another CDS with the same product name.
  
     0.520
kdgF
Cupin domain protein; COG: COG1917; Pfam: PF07883; InterPro: IPR013096.
 
     0.508
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.