STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgFCupin domain protein; COG: COG1917; Pfam: PF07883; InterPro: IPR013096. (107 aa)    
Predicted Functional Partners:
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.634
LutR_6
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
 
  
 0.564
EFE94937.1
TRAP transporter solute receptor, TAXI family; COG: COG2358; InterPro: IPR011852.
 
     0.545
EFE94936.1
TRAP transporter, 4TM/12TM fusion protein; COG: COG4666; Pfam: PF06808; InterPro: IPR011853.
 
     0.508
LhgO_2
FAD dependent oxidoreductase; COG: COG0579; Pfam: PF01266; InterPro: IPR006076.
  
    0.442
kduD-2
2-deoxy-D-gluconate 3-dehydrogenase; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
  
   
 0.440
kduD
2-deoxy-D-gluconate 3-dehydrogenase; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
  
   
 0.436
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.