STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94948.1Transporter, small conductance mechanosensitive ion channel MscS family protein; Pfam: PF00924; InterPro: IPR006685. (537 aa)    
Predicted Functional Partners:
EFE94158.1
Hypothetical protein.
  
     0.638
EFE94157.1
Tetratricopeptide repeat protein; Pfam: PF07719; InterPro: IPR011990.
  
     0.435
EFE97103.1
Phage tail fiber repeat protein; COG: COG5301; Pfam: PF03406,PF07484; InterPro: IPR011083.
  
     0.425
ivy
Inhibitor of vertebrate lysozyme; Pfam: PF08816; InterPro: IPR014453.
  
    0.425
EFE94159.1
Hypothetical protein.
  
     0.410
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.405
aslA
Arylsulfatase; COG: COG3119; Pfam: PF00884; InterPro: IPR000917.
 
     0.405
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.