STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
torDCytoplasmic chaperone TorD; COG: COG3381; Pfam: PF06192; InterPro: IPR010395. (192 aa)    
Predicted Functional Partners:
YcdX
Putative hydrolase; COG: COG1387; Pfam: PF02811; InterPro: IPR004013; Belongs to the PHP family.
  
 
 0.832
EFE96176.1
Hypothetical protein.
  
     0.773
EFE94900.1
Hypothetical protein; COG: COG3140; Pfam: PF03701; InterPro: IPR005371; Belongs to the UPF0181 family.
  
     0.770
EFE94427.1
Hypothetical protein.
  
     0.770
YfeY_2
Hypothetical protein; Pfam: PF06572; InterPro: IPR010938.
  
     0.766
YceB
Hypothetical protein; Pfam: PF07273; InterPro: IPR010835.
  
     0.762
EFE96731.1
Hypothetical protein; COG: COG3776; Pfam: PF06611; InterPro: IPR009525.
  
     0.761
matP
Hypothetical protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.761
EFE96215.1
Hypothetical protein.
  
     0.759
lpoA
LppC; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a). Belongs to the LpoA family.
  
     0.755
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.