STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yecMYecM protein; COG: COG3102; Pfam: PF06185; InterPro: IPR010393. (187 aa)    
Predicted Functional Partners:
ybgE
Cyd operon protein YbgE; COG: COG3790; InterPro: IPR011846.
  
     0.771
oapA
Opacity-associated protein A; COG: COG3061; Pfam: PF08525,PF04225; InterPro: IPR007340.
  
    0.766
EFE93607.1
Hypothetical protein.
  
     0.746
uspB
Universal stress protein UspB.
  
     0.741
YijD
Hypothetical protein; Pfam: PF07226; InterPro: IPR009867.
  
     0.739
EFE97704.1
Putative protein smp; COG: COG3726.
  
     0.735
EFE96463.1
Hypothetical protein.
  
     0.718
yfbU
YfbU domain protein; COG: COG3013; Pfam: PF03887; InterPro: IPR005587; Belongs to the UPF0304 family.
  
     0.718
dapX
NlpB/DapX lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.710
EFE97569.1
Hypothetical protein.
  
     0.706
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.