STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
levRSigma-54 interaction domain protein; Pfam: PF00158,PF00874; InterPro: IPR002078. (936 aa)    
Predicted Functional Partners:
ptfA
PTS system fructose IIA component; Pfam: PF03610; InterPro: IPR004701.
 
  
 0.931
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
 
 
 0.923
ptfB
PTS system sorbose subfamily IIB component; COG: COG3444; Pfam: PF03830; InterPro: IPR004720.
 
  
 0.919
ptpC
PTS system sorbose-specific iic component; COG: COG3715; Pfam: PF03609; InterPro: IPR004700.
 
  
 0.907
ptnD
PTS system mannose/fructose/sorbose family IID component; COG: COG3716; Pfam: PF03613; InterPro: IPR004704.
 
  
 0.901
manX
PTS system, mannose/fructose/sorbose family, IIB component; COG: COG3444; Pfam: PF03610,PF03830; InterPro: IPR004720.
 
  
 0.726
pspA
Phage shock protein A; COG: COG1842; Pfam: PF04012; InterPro: IPR014319.
   
 
 0.681
manZ
PTS system, mannose/fructose/sorbose family, IID component; COG: COG3716; Pfam: PF03613; InterPro: IPR004704.
 
  
 0.644
EFE95014.1
EF_0839/AHA_3917 family protein; Pfam: PF07071; InterPro: IPR010763.
 
     0.644
manY
Mannose permease IIC component; COG: COG3715; Pfam: PF03609; InterPro: IPR004700.
 
  
 0.636
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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