STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95014.1EF_0839/AHA_3917 family protein; Pfam: PF07071; InterPro: IPR010763. (248 aa)    
Predicted Functional Partners:
SelA_3
Putative pyridoxal phosphate-dependent enzyme; COG: COG1921; Pfam: PF03841; InterPro: IPR006337.
 
 
  0.996
eda-3
KHG/KDPG aldolase; COG: COG0800; Pfam: PF01081; InterPro: IPR013785.
    
  0.920
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
     
 0.912
ptpC
PTS system sorbose-specific iic component; COG: COG3715; Pfam: PF03609; InterPro: IPR004700.
 
    0.906
kdgK
Kinase, PfkB family; COG: COG0524; Pfam: PF00294; InterPro: IPR011611.
  
 
  0.904
kdgK2
Kinase, PfkB family; COG: COG0524; Pfam: PF00294; InterPro: IPR011611.
  
 
  0.904
eda-2
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; COG: COG0800; Pfam: PF01081; InterPro: IPR013785.
     
  0.900
ptfA
PTS system fructose IIA component; Pfam: PF03610; InterPro: IPR004701.
 
    0.889
ptnD
PTS system mannose/fructose/sorbose family IID component; COG: COG3716; Pfam: PF03613; InterPro: IPR004704.
 
    0.854
SelA_2
Putative pyridoxal phosphate-dependent enzyme; COG: COG1921; Pfam: PF01212; InterPro: IPR006337.
 
    0.841
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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