STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadAD-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids. (434 aa)    
Predicted Functional Partners:
hisC
Histidinol-phosphate transaminase; COG: COG0079; Pfam: PF00155; InterPro: IPR005861; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.904
ldh
malate/L-lactate dehydrogenase; COG: COG2055; Pfam: PF02615; InterPro: IPR003767; Belongs to the LDH2/MDH2 oxidoreductase family.
     
 0.902
tyrB
Aminotransferase, class I/II; COG: COG1448; Pfam: PF00155; InterPro: IPR000796.
     
 0.901
aspC2
Aminotransferase, class I/II; COG: COG1448; Pfam: PF00155; InterPro: IPR000796.
     
 0.901
EFE95040.1
Putative alanine racemase; COG: COG0787; Pfam: PF01168; InterPro: IPR001608.
  
  
 0.867
alr-2
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.847
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.693
fadD2
long-chain-fatty-acid--CoA ligase; COG: COG0318; Pfam: PF00501; InterPro: IPR000873.
   
  
 0.665
hisJ
Lysine-arginine-ornithine-binding periplasmic protein; COG: COG0834; Pfam: PF00497; InterPro: IPR005768; Belongs to the bacterial solute-binding protein 3 family.
   
    0.657
mglB
Sugar-binding domain protein; COG: COG1879; Pfam: PF00532.
   
  
 0.636
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.