STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NikBABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515. (562 aa)    
Predicted Functional Partners:
nikD
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005,PF08352; InterPro: IPR003593.
 
 
 0.966
GsiB_2
ABC transporter, substrate-binding protein, family 5; Pfam: PF00496; InterPro: IPR000914.
 
 
 0.965
oppD2
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005,PF08352; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
 
 
 0.932
dppD
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005,PF08352; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
 
 
 0.930
GsiA_13
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005,PF08352; InterPro: IPR003593.
 
 
 0.926
dppD3
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005; InterPro: IPR003593.
 
 
 0.922
oppD
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005,PF08352; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
 
 
 0.914
nikE
ABC transporter, ATP-binding protein; COG: COG4608; Pfam: PF00005; InterPro: IPR003439.
 
  
 0.912
dppF2
ABC transporter, ATP-binding protein; COG: COG1124; Pfam: PF00005,PF08352; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
 
  
 0.888
EFE94540.1
Hypothetical protein; COG: COG1123; Pfam: PF00005; InterPro: IPR003439.
 
  
 0.881
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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