STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nikEABC transporter, ATP-binding protein; COG: COG4608; Pfam: PF00005; InterPro: IPR003439. (261 aa)    
Predicted Functional Partners:
NikB
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
 
  
 0.912
nikD
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005,PF08352; InterPro: IPR003593.
 
   
0.858
dppC4
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
  
 0.851
dppC5
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
  
 0.821
GsiB_2
ABC transporter, substrate-binding protein, family 5; Pfam: PF00496; InterPro: IPR000914.
  
  
 0.796
dppC3
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
  
 0.736
EFE94540.1
Hypothetical protein; COG: COG1123; Pfam: PF00005; InterPro: IPR003439.
    0.731
DdpC_1
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
  
 0.719
dppC6
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
  
 0.710
oppC
Oligopeptide transport system permease protein OppC; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
  
 0.706
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.