STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mipAMltA-interacting protein MipA; COG: COG3713; Pfam: PF06629; InterPro: IPR010583. (249 aa)    
Predicted Functional Partners:
EFE96807.1
Hypothetical protein.
  
     0.759
EFE95752.1
Hypothetical protein.
  
     0.748
yfhB
HAD hydrolase, family IF; COG: COG0560; InterPro: IPR006435.
  
     0.725
EFE96215.1
Hypothetical protein.
  
     0.718
EFE95974.1
Hypothetical protein.
  
     0.709
EFE96176.1
Hypothetical protein.
  
     0.663
ppdA
Prepilin-type cleavage/methylation N-terminal domain protein; COG: COG2165; Pfam: PF07963.
  
     0.629
EFE94755.1
Hypothetical protein.
  
     0.592
EFE97088.1
Hypothetical protein; Pfam: PF07305; InterPro: IPR009918.
  
     0.575
YdgH_3
Hypothetical protein; Pfam: PF07338.
  
     0.573
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.