STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yeaDAldose 1-epimerase; COG: COG0676; Pfam: PF01263; InterPro: IPR014718; Belongs to the glucose-6-phosphate 1-epimerase family. (292 aa)    
Predicted Functional Partners:
pgm
Phosphoglucomutase, alpha-D-glucose phosphate-specific; COG: COG0033; Pfam: PF02878,PF02879,PF02880,PF00408; InterPro: IPR005852.
   
 
 0.918
pgi
Glucose-6-phosphate isomerase; COG: COG0166; Pfam: PF00342; InterPro: IPR001672; Belongs to the GPI family.
  
 
 0.917
crr
Glucose-specific phosphotransferase enzyme IIA component; COG: COG2190; Pfam: PF00358; InterPro: IPR001127.
  
  
  0.911
glk
Glucokinase; COG: COG0837; Pfam: PF02685; InterPro: IPR003836; Belongs to the bacterial glucokinase family.
    
  0.907
ascB
Glycosyl hydrolase, family 1; COG: COG2723; Pfam: PF00232; InterPro: IPR001360; Belongs to the glycosyl hydrolase 1 family.
     
 0.901
bglH
Glycosyl hydrolase, family 1; COG: COG2723; Pfam: PF00232; InterPro: IPR001360; Belongs to the glycosyl hydrolase 1 family.
     
 0.901
celH
Glycosyl hydrolase, family 1; COG: COG2723; Pfam: PF00232; InterPro: IPR001360; Belongs to the glycosyl hydrolase 1 family.
     
 0.901
bgl
Glycosyl hydrolase, family 1; COG: COG2723; Pfam: PF00232; InterPro: IPR001360; Belongs to the glycosyl hydrolase 1 family.
     
 0.901
lacG
Beta-galactosidase; COG: COG2723; Pfam: PF00232; InterPro: IPR001360; Belongs to the glycosyl hydrolase 1 family.
     
 0.901
chbF
Family 4 glycosyl hydrolase; COG: COG1486; Pfam: PF02056; InterPro: IPR001088.
     
  0.900
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.