STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugdNucleotide sugar dehydrogenase; COG: COG1004; Pfam: PF03721,PF00984,PF03720; InterPro: IPR014028. (447 aa)    
Predicted Functional Partners:
RffG_2
NAD dependent epimerase/dehydratase family protein; COG: COG0451; Pfam: PF01370; InterPro: IPR016040.
 
 0.994
galU
UTP--glucose-1-phosphate uridylyltransferase; COG: COG1210; Pfam: PF00483; InterPro: IPR005835.
 
 0.983
arnA
Polymyxin resistance protein PmrI; COG: COG0451; Pfam: PF02911,PF01370; InterPro: IPR016040; overlaps another CDS with the same product name.
 
 0.974
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.954
galU-2
UTP--glucose-1-phosphate uridylyltransferase; COG: COG1210; Pfam: PF00483; InterPro: IPR005771.
 
 0.954
galU-3
UTP--glucose-1-phosphate uridylyltransferase; COG: COG1210; Pfam: PF00483; InterPro: IPR005835.
 
 0.954
galE
UDP-glucose 4-epimerase; COG: COG1087; Pfam: PF01370; InterPro: IPR005886; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 
 0.951
rfbB
dTDP-glucose 4,6-dehydratase; COG: COG1088; Pfam: PF01370; InterPro: IPR005888; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.876
galT
UTP--hexose-1-phosphate uridylyltransferase; COG: COG1085; Pfam: PF01087,PF02744; InterPro: IPR001937; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.
    
 0.816
EFE95217.1
Polysaccharide biosynthesis protein; Pfam: PF01943; InterPro: IPR002797.
  
  
 0.706
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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