STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YciUHypothetical protein; COG: COG3099; Pfam: PF04269; InterPro: IPR007376; Belongs to the UPF0263 family. (107 aa)    
Predicted Functional Partners:
EFE98159.1
Hypothetical protein; COG: COG3056; Pfam: PF03923; InterPro: IPR005619.
  
     0.768
cpxP
Periplasmic repressor CpxP; COG: COG3678; Pfam: PF07813.
  
     0.756
atpI
ATP synthase F0, I subunit; COG: COG3312; Pfam: PF03899; InterPro: IPR005598.
  
     0.749
EFE95529.1
YfcL protein; Pfam: PF08891; InterPro: IPR014987.
  
     0.748
minE
Putative cell division topological specificity factor MinE; COG: COG0851; Pfam: PF03776.
  
     0.739
ompX
Outer membrane protein X; COG: COG3637; Pfam: PF06316; InterPro: IPR000758.
  
     0.727
Spy_2
Hypothetical protein; COG: COG3678; Pfam: PF07813.
  
     0.710
aaeX
Hypothetical protein; Pfam: PF07869; InterPro: IPR012451.
  
     0.707
ybgE
Cyd operon protein YbgE; COG: COG3790; InterPro: IPR011846.
  
     0.706
LpoB
Hypothetical protein; COG: COG3417.
  
     0.699
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.