STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YciCHypothetical protein; Pfam: PF06790; InterPro: IPR009627. (250 aa)    
Predicted Functional Partners:
TomB
Hypothetical protein.
  
     0.771
EFE96912.1
Hypothetical protein; Overlaps another CDS with the same product name; 3.6.1.-.
  
     0.771
aaeX
Hypothetical protein; Pfam: PF07869; InterPro: IPR012451.
  
     0.771
EFE94171.1
Hypothetical protein.
  
     0.771
cpxP
Periplasmic repressor CpxP; COG: COG3678; Pfam: PF07813.
  
     0.770
holE
DNA polymerase III subunit theta; Pfam: PF06440; InterPro: IPR011325.
  
     0.770
ompX
Outer membrane protein X; COG: COG3637; Pfam: PF06316; InterPro: IPR000758.
  
     0.769
EFE94080.1
Hypothetical protein; COG: COG5633; Pfam: PF07233; InterPro: IPR010824.
  
     0.767
YdgH_3
Hypothetical protein; Pfam: PF07338.
  
     0.764
EFE96463.1
Hypothetical protein.
  
     0.763
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.