STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araD-2L-ribulose-5-phosphate 4-epimerase; COG: COG0235; Pfam: PF00596; InterPro: IPR001303. (244 aa)    
Predicted Functional Partners:
araB-2
Ribulokinase; COG: COG1069; Pfam: PF00370,PF02782; InterPro: IPR005929.
 
 
 0.983
sgbU
Putative hexulose-6-phosphate isomerase; COG: COG3623; Pfam: PF01261; InterPro: IPR004560.
 
  0.982
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.970
xylB
Xylulokinase; COG: COG1070; Pfam: PF00370,PF02782; InterPro: IPR006000.
 
 
 0.932
rpe
Ribulose-phosphate 3-epimerase; COG: COG0036; Pfam: PF00834; InterPro: IPR013785; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.909
araD
L-ribulose-5-phosphate 4-epimerase; COG: COG0235; Pfam: PF00596; InterPro: IPR001303.
  
  
 
0.901
uxaC
Glucuronate isomerase; COG: COG1904; Pfam: PF02614; InterPro: IPR003766.
     
 0.817
rspB
GroES-like protein; COG: COG1063; Pfam: PF08240,PF00107; InterPro: IPR002085.
  
 
 0.803
araB
FGGY-family pentulose kinase; COG: COG1069; Pfam: PF00370,PF02782; InterPro: IPR006003.
  
 
 0.659
abf
Glycosyl hydrolase, family 43; COG: COG3940; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.548
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.