STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgT2-keto-3-deoxygluconate transporter; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family. (327 aa)    
Predicted Functional Partners:
YciE_2
Hypothetical protein; COG: COG3685; Pfam: PF05974; InterPro: IPR010287.
  
     0.585
YciE_1
Hypothetical protein; COG: COG3685; Pfam: PF05974; InterPro: IPR010287.
  
     0.522
EFE96210.1
Hypothetical protein.
 
   
 0.445
pdxA-2
4-hydroxythreonine-4-phosphate dehydrogenase; COG: COG1995; Pfam: PF04166; InterPro: IPR005255; Belongs to the PdxA family.
 
     0.428
fsa-2
Fructose-6-phosphate aldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
       0.428
eda-2
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; COG: COG0800; Pfam: PF01081; InterPro: IPR013785.
  
  
 0.404
eda-3
KHG/KDPG aldolase; COG: COG0800; Pfam: PF01081; InterPro: IPR013785.
  
  
 0.404
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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