STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YcjX_3YcjX-like family, DUF463; COG: COG3106; Pfam: PF04317; InterPro: IPR007413. (465 aa)    
Predicted Functional Partners:
YcjF
TIGR01620 family protein; COG: COG3768; Pfam: PF05128; InterPro: IPR006507.
 
  
 0.990
pspD
Phage shock protein PspD; InterPro: IPR014321.
     
 0.665
mepA
Peptidoglycan amidase MepA; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.658
pspB-2
Phage shock protein B; Pfam: PF06667; InterPro: IPR009554.
 
   
 0.563
EFE95636.1
Hypothetical protein; Pfam: PF00903.
  
     0.557
tyrR
Sigma-54 interaction domain protein; COG: COG3283; Pfam: PF01842,PF00989,PF00158; InterPro: IPR002078.
  
  
 0.546
pspC
Phage shock protein C; COG: COG1983; Pfam: PF04024; InterPro: IPR014320.
     
 0.504
pspA
Phage shock protein A; COG: COG1842; Pfam: PF04012; InterPro: IPR014319.
     
 0.481
EFE94270.1
Hypothetical protein; COG: COG3108; Pfam: PF05951; InterPro: IPR010275.
  
     0.436
EFE98004.1
Hypothetical protein; COG: COG3034; Pfam: PF06104; InterPro: IPR010355.
  
     0.432
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.