STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94810.13-demethylubiquinone-9 3-methyltransferase domain protein; COG: COG3865; Pfam: PF06983; InterPro: IPR009725. (158 aa)    
Predicted Functional Partners:
YbaA
Hypothetical protein; COG: COG5507; Pfam: PF07237; InterPro: IPR009874.
 
     0.877
yjdN
Glyoxalase family protein; COG: COG2764; Pfam: PF00903.
 
  
 0.796
EFE96366.1
Glyoxalase family protein; COG: COG3607; Pfam: PF00903.
 
     0.697
EFE94808.1
Hypothetical protein.
       0.568
CmtR
Transcriptional regulator, ArsR family; COG: COG0640; Pfam: PF01022; InterPro: IPR011991.
 
     0.564
dsdA
D-serine ammonia-lyase; COG: COG3048; Pfam: PF00291; InterPro: IPR011780.
       0.554
sulA
TIGR01777 family protein; COG: COG1090; Pfam: PF01370,PF08338; InterPro: IPR010099.
  
    0.549
chiC
Chitinase C1; COG: COG3469; Pfam: PF00704,PF00041,PF02839; InterPro: IPR001223; Belongs to the glycosyl hydrolase 18 family.
   
    0.543
EFE94342.1
NAD dependent epimerase/dehydratase family protein; COG: COG2910; Pfam: PF01370; InterPro: IPR016040.
   
    0.518
FecI
Sigma-70 region 2; COG: COG1595; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family.
  
     0.443
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.