STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94815.1Hypothetical protein. (208 aa)    
Predicted Functional Partners:
EFE94816.1
Hypothetical protein.
     0.994
EFE94814.1
Virulence factor SrfB; COG: COG4457; Pfam: PF07520; InterPro: IPR009216.
 
  
 0.969
EFE94813.1
Hypothetical protein.
 
  
 0.959
gmr
RNase II stability modulator; COG: COG2202.
  
    0.722
mtlR
Mannitol operon repressor; COG: COG3722; Pfam: PF05068; InterPro: IPR007761.
  
     0.676
bcsE
Cellulose biosynthesis protein BcsE.
  
     0.620
EFE94817.1
GAF domain/diguanylate cyclase domain family protein.
  
    0.549
EFE93849.1
Hypothetical protein.
  
     0.522
lamB
LamB porin; Involved in the transport of maltose and maltodextrins. Belongs to the porin LamB (TC 1.B.3) family.
  
     0.453
EFE95109.1
FHA domain protein; Pfam: PF00498.
  
     0.448
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.